PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0017s00300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 574aa    MW: 62254.9 Da    PI: 8.1201
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0017s00300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-09202247144
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                       r+ W++eEd +l  av+++G g+W+t a+  +   +R++ q+  rw
  Vang0017s00300.1 202 RKTWSEEEDIQLRAAVQRWGEGNWATMAKGDNfpIKRSPTQLAQRW 247
                       789*************************987788669999999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.707197255IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-11198252IPR009057Homeodomain-like
SuperFamilySSF466892.01E-10200253IPR009057Homeodomain-like
SMARTSM007177.5E-10201253IPR001005SANT/Myb domain
PfamPF002491.2E-8202247IPR001005SANT/Myb domain
CDDcd116604.92E-11203252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MSEKKTRVSF TEKDAVALMQ RYDPTTVFIL LQEVAHYAKP KIDWSELVKK SATGISNVRE  60
YQMLWRHLAY RHSLPENFEV GAEPLDDDSD LECELEELPH VSVESASEAA ACVKVMIASR  120
TLSDSAPSSS TIEAPLTINV PVCHSSATLI ESSQPSNLMQ GTNIVFPVTV QRQTLPTHPV  180
PPTDGIESKG LVGGNLASKR KRKTWSEEED IQLRAAVQRW GEGNWATMAK GDNFPIKRSP  240
TQLAQRWSIL RKKDGTVNSG TISTSSQYTT AEQLATRHSL SLALDMPFKK LTAPGVSDPV  300
KNQVQIRNTV EKVATSFVPP QQPSRQASLL GSDSHSHVKP KLVDEKLISK GNIISNPVLK  360
STTAAPGTRI DSPSNTISHV KIAPVKHNVD TKPAVSSLTK PSVSTNMPSD PKNKPTTSLA  420
DKVPLEQDAN STKDDPSSRP KDQTPKNEAP KVTIDSQVNS NLEKGRLDIG QAKIVPVSSG  480
EESLKDKASP VTDEKQPSVT KANAAVSENQ GSVKNATENS NLDKGNLTSN QDKKTSINES  540
SNNQNINDKH VNLPVQDEGS QSAKVVKLME NVE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498767.10.0PREDICTED: uncharacterized protein LOC106759899 isoform X1
TrEMBLA0A0S3RD510.0A0A0S3RD51_PHAAN; Uncharacterized protein
STRINGGLYMA06G10170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.16e-58MYB_related family protein